I will run it with BWA , BBMAP , MapPacBio and compare the results , I would guess that once the insert/delete get higher and alignment length starts dropping below 30-40 bp it will start becoming possible , but I will post up the results , but if its not there with Bowtie , I would say it wasn't actually there as this one is slack and f…
I will run it with BWA , BBMAP , MapPacBio and compare the results , I would guess that once the insert/delete get higher and alignment length starts dropping below 30-40 bp it will start becoming possible , but I will post up the results , but if its not there with Bowtie , I would say it wasn't actually there as this one is slack and forgiving enough as it is . At least it will give me a rough idea and how to reverse engineer what rules they are following.
I will run it with BWA , BBMAP , MapPacBio and compare the results , I would guess that once the insert/delete get higher and alignment length starts dropping below 30-40 bp it will start becoming possible , but I will post up the results , but if its not there with Bowtie , I would say it wasn't actually there as this one is slack and forgiving enough as it is . At least it will give me a rough idea and how to reverse engineer what rules they are following.